The CPU Core was the final step of most Alter Ego-equipped systems that Bentley attempts to hack. It was a formidable opponent, given that it's been overclocked, but each and every time, Bentley defeated it and took total control of the computer.
- Eye Laser - Its most powerful and useful attack, avoided easily by hiding behind cover. The laser's charge generates a shield around the core that will harm Bentley if he touches it.
- Goo Minion - The core sends a goo-like minion to kamikaze Bentley and take away some health. It is sometimes transparent and easy to overlook.